Exploring the Co-Occurrence of Methane Oxidation and Bioplastic Genes in Microorganisms
DOI:
https://doi.org/10.47611/jsrhs.v13i3.7475Keywords:
Methane oxidation, Bioplastic production, Phylogeny, PHA synthase, Genetic co-occurenceAbstract
Methane, a potent greenhouse gas, significantly contributes to climate change. This study investigates the potential of utilizing microbial pathways for converting methane into bioplastics, focusing on the co-occurrence of methane monooxygenase alpha subunit (mmoA) and PHA synthase subunit C (phaC) genes in diverse microbial strains. We identified and analyzed 43 mmoA and 20 phaC protein sequences across various phyla, constructing phylogenetic trees and pairwise identity heatmaps to illustrate gene similarities and evolutionary relationships. The results highlight a broad diversity of microbial candidates for methanotrophic bioplastic production, spanning deep-branching groups like Euryarchaeota and more evolved taxa such as Proteobacteria. Notably, some strains, like Haloglomus in Euryarchaeota, show promise for bioplastic production under specific environmental conditions, such as high-salt environments. The findings suggest that expanding the range of microbial platforms beyond traditionally studied genera like Methylosinus could enhance bioplastic yield and functionality, offering more sustainable and versatile production methods. This study provides a foundation for developing innovative biotechnological solutions to mitigate methane emissions and produce biodegradable plastics, contributing to environmental sustainability and a circular economy.
Downloads
References or Bibliography
Chek, M. F., Kim, S.-Y., Mori, T., Arsad, H., Samian, M. R., Sudesh, K., & Hakoshima, T. (2017). Structure of polyhydroxyalkanoate (PHA) synthase PhaC from Chromobacterium sp. USM2, producing biodegradable plastics. Scientific Reports, 7, 5312. https://doi.org/10.1038/s41598-017-05509-4
Davamani, V., Parameswari, E., & Arulmani, S. (2020). Mitigation of methane gas emissions in flooded paddy soil through the utilization of methanotrophs. Science of the Total Environment, 726, 138570. https://doi.org/10.1016/j.scitotenv.2020.138570
Gęsicka, A., Oleskowicz-Popiel, P., & Łęzyk, M. (2021). Recent trends in methane to bioproduct conversion by methanotrophs. Biotechnology Advances, 53, 107861. https://doi.org/10.1016/j.biotechadv.2021.107861
Han, J., Hou, J., Liu, H., Cai, S., Feng, B., Zhou, J., & Xiang, H. (2010). Wide distribution among halophilic archaea of a novel polyhydroxyalkanoate synthase subtype with homology to bacterial type III synthases. Applied and Environmental Microbiology, 76(23), 7811-7819. https://doi.org/10.1128/AEM.01117-10
Liu, L.-Y., Xie, G.-J., Xing, D.-F., Liu, B.-F., Ding, J., & Ren, N.-Q. (2020). Biological conversion of methane to polyhydroxyalkanoates: Current advances, challenges, and perspectives. Environmental Science & Ecotechnology, 2, 100029. https://doi.org/10.1016/j.ese.2020.100029
Mitra, R., Xu, T., Xiang, H., & Han, J. (2020). Current developments on polyhydroxyalkanoates synthesis by using halophiles as a promising cell factory. Microbial Cell Factories,19(86). https://doi.org/10.1186/s12934-020-01342-z
Rumah, B., Stead, C. E., Stevens, B. H. C., Minton, N. P., Grosse-Honebrink, A., & Zhang, Y. (2021). Isolation and characterisation of Methylocystis spp. for poly-3-hydroxybutyrate production using waste methane feedstocks. AMB Express, 11, 6. https://doi.org/10.1186/s13568-020-01159-4
Sahoo, K. K., Goswami, G., & Das, D. (2021). Biotransformation of methane and carbon dioxide into high-value products by methanotrophs: Current state of art and future prospects. Frontiers in Microbiology, 12, 636486. https://doi.org/10.3389/fmicb.2021.636486
Safaeian, P., Yazdian, F., Khosravi-Darani, K., Rashedi, H., & Lackner, M. (2023). P3HB from CH4 using methanotrophs: Aspects of bioreactor, fermentation process, and modeling for cost-effective biopolymer production. Frontiers in Bioengineering and Biotechnology, 11, 1137749. https://doi.org/10.3389/fbioe.2023.1137749
Sakai, Y., Yurimoto, H., & Shima, S. (2023). Methane monooxygenases; physiology, biochemistry and structure. Catalysis Science & Technology, 13, 6342. https://doi.org/10.1039/d3cy00737e
Semrau, J. D. (2011). Bioremediation via methanotrophy: Overview of recent findings and suggestions for future research. Frontiers in Microbiology, 2, 209. https://doi.org/10.3389/fmicb.2011.00209
Stecher, G., Tamura, K., & Kumar, S. (2020). Molecular Evolutionary Genetics Analysis (MEGA) for macOS. Molecular Biology and Evolution, 37(4), 1237-1239. https://doi.org/10.1093/molbev/msz312
Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution, 38(7), 3022-3027. https://doi.org/10.1093/molbev/msab120
United Nations Environment Programme. (2024). Methane emissions are driving climate change. Here’s how to reduce them. UNEP. Accessed on May 2024. https://www.unep.org/news-and-stories/story/methane-emissions-are-driving-climate-change-heres-how-reduce-them#:~:text=What's%20the%20big%20deal%20about,also%20a%20powerful%20greenhouse%20gas.
Ritchie, H., Rosado, P., & Roser, M. (2020-2024). Greenhouse gas emissions. Published online at OurWorldInData.org. This page was first published in June 2020 and last revised in January 2024. Accessed on May 2024. https://ourworldindata.org/greenhouse-gas-emissions
Published
How to Cite
Issue
Section
Copyright (c) 2024 Phillip Jong; Yong-Ju Reichenberger

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Copyright holder(s) granted JSR a perpetual, non-exclusive license to distriute & display this article.


